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Current File : /usr/share/snap/HMM/minimal.hmm
zoeHMM minimal.hmm 6 8 6 7

<STATES>

Einit	0	0	3	-1	explicit
Esngl	0	0	150	-1	explicit
Eterm	0	0	3	-1	explicit
Exon	0	0	6	-1	explicit
Inter	0.9	0.9	0	0	geometric
Intron	0.1	0.1	0	0	geometric

<STATE_TRANSITIONS>

Einit	Intron	1
Esngl	Inter	1
Eterm	Inter	1
Exon	Intron	1
Inter	Einit	0.977636
Inter	Esngl	0.022364
Intron	Eterm	0.160251
Intron	Exon	0.839749

<PHASE_PREFERENCES>

0.488562
0.297386
0.214052
0.594784
0.189567
0.215649
0.557522
0.222503
0.219975
0.582938
0.194313
0.222749
0.816676
0.183324
0.862282
0.137718
0.861538
0.138462

<STATE_DURATIONS>

Einit 2
	DEFINED 0 249
		-9.508 -9.398 -9.295 -9.200 -9.110 
		-9.026 -8.946 -8.870 -8.799 -8.730 
		-8.665 -8.609 -8.556 -8.504 -8.454 
		-8.406 -8.359 -8.314 -8.270 -8.227 
		-8.186 -8.141 -8.097 -8.055 -8.014 
		-7.974 -7.934 -7.897 -7.859 -7.823 
		-7.788 -7.759 -7.730 -7.702 -7.674 
		-7.647 -7.621 -7.594 -7.569 -7.544 
		-7.519 -7.493 -7.468 -7.444 -7.420 
		-7.396 -7.373 -7.350 -7.327 -7.305 
		-7.283 -7.266 -7.249 -7.232 -7.215 
		-7.199 -7.183 -7.167 -7.151 -7.135 
		-7.120 -7.125 -7.130 -7.134 -7.139 
		-7.144 -7.149 -7.154 -7.159 -7.164 
		-7.169 -7.183 -7.196 -7.210 -7.224 
		-7.238 -7.252 -7.266 -7.281 -7.295 
		-7.310 -7.321 -7.333 -7.344 -7.355 
		-7.367 -7.378 -7.390 -7.402 -7.414 
		-7.426 -7.441 -7.456 -7.471 -7.487 
		-7.503 -7.519 -7.535 -7.551 -7.568 
		-7.584 -7.590 -7.596 -7.601 -7.607 
		-7.613 -7.618 -7.624 -7.630 -7.636 
		-7.641 -7.655 -7.670 -7.684 -7.698 
		-7.713 -7.728 -7.743 -7.758 -7.773 
		-7.788 -7.804 -7.819 -7.835 -7.851 
		-7.868 -7.884 -7.901 -7.917 -7.934 
		-7.952 -7.972 -7.993 -8.014 -8.035 
		-8.056 -8.078 -8.101 -8.123 -8.146 
		-8.169 -8.186 -8.203 -8.221 -8.238 
		-8.256 -8.274 -8.292 -8.310 -8.329 
		-8.348 -8.376 -8.406 -8.436 -8.466 
		-8.498 -8.529 -8.562 -8.596 -8.630 
		-8.665 -8.677 -8.689 -8.701 -8.713 
		-8.725 -8.738 -8.750 -8.763 -8.775 
		-8.788 -8.806 -8.825 -8.843 -8.862 
		-8.881 -8.901 -8.920 -8.940 -8.960 
		-8.981 -8.990 -8.999 -9.008 -9.017 
		-9.026 -9.035 -9.044 -9.053 -9.063 
		-9.072 -9.078 -9.085 -9.091 -9.097 
		-9.104 -9.110 -9.117 -9.123 -9.130 
		-9.136 -9.173 -9.210 -9.249 -9.288 
		-9.329 -9.371 -9.414 -9.458 -9.504 
		-9.551 -9.551 -9.551 -9.551 -9.551 
		-9.551 -9.551 -9.551 -9.551 -9.551 
		-9.551 -9.573 -9.596 -9.618 -9.641 
		-9.665 -9.689 -9.713 -9.738 -9.763 
		-9.788 -9.793 -9.799 -9.804 -9.809 
		-9.814 -9.819 -9.825 -9.830 -9.835 
		-9.841 -9.846 -9.851 -9.857 -9.862 
		-9.868 -9.873 -9.879 -9.884 -9.890 
	GEOMETRIC 250 -1
		127

Esngl 1
	GEOMETRIC 0 -1
		1000

Eterm 2
	DEFINED 0 249
		-11.438 -11.375 -11.315 -11.257 -11.202 
		-11.148 -11.097 -11.047 -10.999 -10.953 
		-10.907 -10.875 -10.842 -10.811 -10.780 
		-10.750 -10.720 -10.691 -10.663 -10.635 
		-10.608 -10.555 -10.504 -10.454 -10.406 
		-10.360 -10.315 -10.272 -10.229 -10.188 
		-10.148 -10.023 -9.907 -9.801 -9.701 
		-9.608 -9.520 -9.438 -9.360 -9.286 
		-9.216 -9.148 -9.084 -9.023 -8.964 
		-8.907 -8.853 -8.801 -8.750 -8.701 
		-8.654 -8.621 -8.590 -8.559 -8.529 
		-8.499 -8.470 -8.442 -8.414 -8.387 
		-8.360 -8.334 -8.308 -8.282 -8.257 
		-8.233 -8.209 -8.185 -8.162 -8.139 
		-8.116 -8.091 -8.066 -8.041 -8.017 
		-7.993 -7.970 -7.947 -7.924 -7.902 
		-7.880 -7.873 -7.866 -7.860 -7.853 
		-7.846 -7.840 -7.833 -7.827 -7.820 
		-7.813 -7.784 -7.755 -7.726 -7.699 
		-7.671 -7.644 -7.618 -7.592 -7.567 
		-7.542 -7.532 -7.523 -7.513 -7.504 
		-7.494 -7.485 -7.476 -7.466 -7.457 
		-7.448 -7.449 -7.450 -7.451 -7.452 
		-7.453 -7.454 -7.455 -7.456 -7.457 
		-7.458 -7.469 -7.481 -7.492 -7.504 
		-7.515 -7.527 -7.539 -7.550 -7.562 
		-7.574 -7.596 -7.617 -7.639 -7.661 
		-7.683 -7.706 -7.729 -7.752 -7.776 
		-7.801 -7.802 -7.803 -7.804 -7.806 
		-7.807 -7.808 -7.810 -7.811 -7.812 
		-7.813 -7.817 -7.821 -7.825 -7.829 
		-7.833 -7.837 -7.841 -7.845 -7.849 
		-7.853 -7.862 -7.872 -7.881 -7.891 
		-7.901 -7.910 -7.920 -7.930 -7.940 
		-7.950 -7.953 -7.955 -7.958 -7.961 
		-7.964 -7.967 -7.970 -7.973 -7.976 
		-7.979 -8.014 -8.050 -8.087 -8.126 
		-8.165 -8.205 -8.247 -8.290 -8.334 
		-8.379 -8.418 -8.458 -8.499 -8.542 
		-8.586 -8.631 -8.677 -8.725 -8.775 
		-8.827 -8.840 -8.853 -8.866 -8.880 
		-8.894 -8.907 -8.921 -8.935 -8.950 
		-8.964 -8.996 -9.029 -9.063 -9.097 
		-9.132 -9.168 -9.205 -9.243 -9.282 
		-9.322 -9.322 -9.322 -9.322 -9.322 
		-9.322 -9.322 -9.322 -9.322 -9.322 
		-9.322 -9.330 -9.337 -9.345 -9.352 
		-9.360 -9.368 -9.375 -9.383 -9.391 
		-9.398 -9.395 -9.391 -9.387 -9.383 
		-9.379 -9.375 -9.371 -9.368 -9.364 
	GEOMETRIC 250 -1
		185

Exon 2
	DEFINED 0 249
		-17.003 -16.155 -15.625 -15.238 -14.933 
		-14.681 -14.467 -14.281 -14.116 -13.968 
		-13.833 -13.667 -13.518 -13.383 -13.259 
		-13.145 -13.040 -12.942 -12.850 -12.763 
		-12.681 -12.424 -12.206 -12.017 -11.850 
		-11.700 -11.564 -11.440 -11.325 -11.219 
		-11.121 -10.933 -10.767 -10.618 -10.483 
		-10.359 -10.246 -10.140 -10.042 -9.950 
		-9.864 -9.747 -9.639 -9.538 -9.444 
		-9.356 -9.273 -9.194 -9.119 -9.049 
		-8.981 -8.889 -8.803 -8.721 -8.644 
		-8.571 -8.501 -8.435 -8.371 -8.310 
		-8.252 -8.206 -8.162 -8.119 -8.078 
		-8.038 -7.998 -7.960 -7.923 -7.886 
		-7.851 -7.829 -7.808 -7.786 -7.765 
		-7.745 -7.724 -7.704 -7.685 -7.665 
		-7.646 -7.640 -7.635 -7.629 -7.624 
		-7.619 -7.613 -7.608 -7.602 -7.597 
		-7.592 -7.586 -7.579 -7.573 -7.567 
		-7.560 -7.554 -7.548 -7.542 -7.536 
		-7.530 -7.532 -7.535 -7.537 -7.539 
		-7.542 -7.544 -7.547 -7.549 -7.552 
		-7.554 -7.553 -7.553 -7.552 -7.551 
		-7.550 -7.549 -7.548 -7.548 -7.547 
		-7.546 -7.549 -7.552 -7.555 -7.558 
		-7.560 -7.563 -7.566 -7.569 -7.572 
		-7.575 -7.595 -7.615 -7.635 -7.656 
		-7.677 -7.698 -7.720 -7.742 -7.764 
		-7.787 -7.803 -7.819 -7.836 -7.853 
		-7.870 -7.888 -7.905 -7.923 -7.941 
		-7.959 -7.977 -7.995 -8.014 -8.033 
		-8.052 -8.071 -8.091 -8.111 -8.131 
		-8.152 -8.176 -8.200 -8.225 -8.250 
		-8.275 -8.302 -8.328 -8.355 -8.383 
		-8.411 -8.423 -8.436 -8.448 -8.461 
		-8.474 -8.487 -8.500 -8.513 -8.526 
		-8.540 -8.553 -8.567 -8.581 -8.595 
		-8.609 -8.623 -8.637 -8.652 -8.667 
		-8.681 -8.696 -8.711 -8.727 -8.742 
		-8.758 -8.774 -8.790 -8.806 -8.822 
		-8.838 -8.848 -8.857 -8.866 -8.875 
		-8.884 -8.894 -8.903 -8.913 -8.922 
		-8.932 -8.943 -8.954 -8.964 -8.975 
		-8.987 -8.998 -9.009 -9.020 -9.032 
		-9.043 -9.058 -9.074 -9.089 -9.105 
		-9.121 -9.137 -9.153 -9.169 -9.186 
		-9.202 -9.213 -9.225 -9.236 -9.247 
		-9.259 -9.270 -9.282 -9.293 -9.305 
		-9.317 -9.324 -9.331 -9.338 -9.345 
		-9.352 -9.359 -9.367 -9.374 -9.381 
	GEOMETRIC 250 -1
		230

Inter 1
	GEOMETRIC 0 -1
		500

Intron 1
	GEOMETRIC 0 -1
		304

<SEQUENCE_MODELS>

Acceptor SDT 2 1 4 2 0.000
	AG WMM 15 11 4 0 0.000
		0.440	-0.800	-1.561	0.790	
		0.452	-0.664	-1.565	0.734	
		0.546	-0.660	-1.787	0.694	
		0.681	-1.267	-1.862	0.771	
		0.743	-1.716	-1.906	0.811	
		0.175	-1.667	-2.024	1.208	
		-2.278	-2.834	-4.043	1.845	
		-5.146	-4.228	-6.441	1.966	
		-1.458	-0.723	-1.433	1.411	
		-2.982	1.737	-7.579	-0.906	
		1.999	-9.900	-9.900	-9.900	
		-9.900	-9.900	1.999	-9.900	
		0.684	-0.753	0.351	-0.929	
		0.220	-0.506	-0.606	0.560	
		0.235	-0.166	-0.481	0.281	
	NN TRM 0 0 0 0 0.000

Coding CDS 3 2 4 3 0.000
	frame0 LUT 3 2 4 0 0.000
		0.379	-0.640	-0.031	0.110	
		0.457	-0.540	-0.680	0.395	
		0.648	-0.283	-1.481	0.325	
		-1.544	-0.140	0.263	0.632	
		0.737	-0.815	-0.173	-0.189	
		1.143	-1.640	-0.371	-0.521	
		0.564	-0.774	-0.859	0.470	
		-0.995	0.115	-0.292	0.677	
		0.427	-0.784	-0.317	0.347	
		0.299	-0.306	-1.001	0.547	
		1.304	-1.108	-1.874	-0.333	
		-0.717	-0.115	-0.212	0.682	
		.	0.818	.	1.162	
		0.461	-0.566	-0.273	0.164	
		.	0.219	0.486	0.521	
		-1.036	0.459	0.087	0.105	
	frame2 LUT 3 2 4 0 0.000
		0.259	-0.386	0.370	-0.423	
		0.487	-0.960	0.318	-0.255	
		0.474	-0.032	-0.057	-0.576	
		-0.282	-0.071	0.514	-0.326	
		0.462	-0.358	-0.029	-0.215	
		0.488	-0.850	0.541	-0.766	
		0.543	-0.790	0.187	-0.275	
		-0.761	0.125	0.694	-0.512	
		0.508	-0.595	0.194	-0.373	
		0.406	-0.334	0.021	-0.205	
		0.515	-0.055	-0.122	-0.535	
		-0.505	-0.072	0.732	-0.550	
		0.176	-0.178	-0.133	0.104	
		0.509	-0.599	0.208	-0.393	
		0.496	-0.478	0.265	-0.577	
		-0.694	0.197	0.560	-0.393	
	frame2 LUT 3 2 4 0 0.000
		0.535	-0.308	-0.915	0.278	
		0.336	-0.007	-0.556	0.087	
		0.665	-0.112	-0.753	-0.160	
		-0.844	0.367	-0.664	0.606	
		0.726	-0.195	-0.919	-0.084	
		0.329	-0.192	-0.150	-0.048	
		0.781	-0.468	-0.212	-0.525	
		-0.194	0.282	-0.631	0.338	
		0.819	-0.554	-0.870	0.011	
		0.392	-0.094	-1.027	0.333	
		0.917	-0.073	-0.982	-0.610	
		-0.646	0.084	-0.512	0.678	
		0.315	-0.237	-1.067	0.516	
		0.326	-0.006	-0.515	0.072	
		0.540	-0.255	-0.159	-0.300	
		-0.826	0.381	-0.700	0.602	

Donor SDT 2 0 4 2 0.000
	GT WMM 9 3 4 0 0.000
		0.642	-0.079	-0.387	-0.458	
		1.179	-0.792	-1.242	-0.443	
		-0.391	-2.106	1.305	-0.903	
		-9.900	-9.900	1.999	-9.900	
		-9.900	-9.900	-9.900	1.999	
		1.187	-4.093	-0.012	-0.572	
		1.405	-1.657	-1.491	-0.558	
		-1.393	-2.561	1.584	-1.149	
		-0.325	-1.357	-1.615	1.313	
	NN TRM 0 0 0 0 0.000

Inter LUT 3 2 4 0 0.000
	0.869	-0.885	-1.237	0.272	
	0.479	-0.437	-0.700	0.324	
	0.527	-0.486	-0.767	0.331	
	-0.141	-0.548	-0.825	0.884	
	0.550	-0.374	-0.699	0.199	
	0.326	-0.056	-0.533	0.129	
	0.336	-0.215	-0.465	0.204	
	-0.347	0.076	-0.529	0.552	
	0.779	-0.800	-0.579	0.057	
	0.335	-0.180	-0.497	0.198	
	0.339	-0.196	-0.450	0.176	
	-0.203	-0.470	-0.330	0.690	
	0.440	-0.610	-0.804	0.501	
	0.336	-0.345	-0.791	0.457	
	0.356	-0.406	-0.731	0.447	
	-0.660	-0.304	-0.758	0.975	

Intron LUT 3 2 4 0 0.000
	1.060	-1.253	-1.395	0.158	
	0.536	-0.477	-0.790	0.325	
	0.401	-0.513	-0.548	0.373	
	-0.121	-0.842	-0.836	0.973	
	0.740	-0.711	-0.395	-0.061	
	0.458	-0.315	-0.246	-0.031	
	0.465	-0.429	-0.153	-0.033	
	0.019	-0.349	-0.309	0.480	
	0.927	-1.032	-0.547	-0.112	
	0.402	-0.126	-0.565	0.120	
	0.280	-0.223	-0.448	0.259	
	0.036	-0.762	-0.295	0.651	
	0.611	-0.775	-0.573	0.282	
	0.528	-0.449	-0.537	0.184	
	0.501	-0.485	-0.504	0.220	
	-0.591	-0.542	-0.755	1.041	

Start SDT 3 0 4 2 0.000
	ATG WMM 12 6 4 0 0.000
		0.078	-0.178	-0.583	0.478	
		0.138	-0.168	-0.464	0.361	
		0.410	0.227	-0.378	-0.451	
		1.203	-0.821	-0.253	-1.773	
		0.998	-0.477	-0.477	-0.821	
		1.016	-0.624	-0.275	-0.993	
		1.993	-7.297	-7.297	-7.297	
		-7.297	-7.297	-7.297	1.993	
		-7.297	-7.297	1.993	-7.297	
		0.296	-0.529	0.281	-0.209	
		0.025	0.561	-0.343	-0.477	
		-0.137	-0.147	-0.030	0.273	
	NNN TRM 0 0 0 0 0.000

Stop SDT 3 0 4 4 0.000
	TAA WMM 9 6 4 0 0.000
		0.419	-0.042	-0.025	-0.497	
		0.571	-0.385	-0.451	0.025	
		0.072	-0.042	-0.222	0.163	
		-0.111	-0.301	0.419	-0.111	
		0.768	-0.723	-1.322	0.369	
		0.317	-0.042	-1.059	0.382	
		-6.451	-6.451	-6.451	1.988	
		1.988	-6.451	-6.451	-6.451	
		1.988	-6.451	-6.451	-6.451	
	TAG WMM 9 6 4 0 0.000
		0.481	0.033	-0.311	-0.367	
		0.512	-0.488	-0.204	-0.011	
		0.159	-0.204	-0.311	0.274	
		-0.011	-0.426	-0.057	0.381	
		0.603	-0.488	-1.552	0.512	
		-0.153	-0.204	0.159	0.159	
		-5.011	-5.011	-5.011	1.966	
		1.966	-5.011	-5.011	-5.011	
		-5.011	-5.011	1.966	-5.011	
	TGA WMM 9 6 4 0 0.000
		0.388	-0.313	-0.143	-0.027	
		0.360	-0.143	-0.225	-0.065	
		0.009	-0.268	-0.225	0.388	
		0.272	-0.669	-0.065	0.272	
		0.494	-0.612	-0.728	0.415	
		-0.506	-0.225	-0.065	0.570	
		-5.313	-5.313	-5.313	1.973	
		-5.313	-5.313	1.973	-5.313	
		1.973	-5.313	-5.313	-5.313	
	NNN TRM 0 0 0 0 0.000

Youez - 2016 - github.com/yon3zu
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